Rn04280453_m1 Best Coverage

• Gene Symbol: Nfatc1
• Gene Name: nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
• Gene Aliases: -
• Chromosome Location: Chr.18: 77203517 - 77322690 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nfatc1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001244933.1	NP_001231862.1	8 - 9	2398		66
GenBank mRNA	FQ222003.1	-	8 - 9	2398		66
	FQ223020.1	-	8 - 9	2398		66

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1800001780.rn.1

• Set Membership: Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

G1/S transition of mitotic cell cycle
negative regulation of transcription by RNA polymerase II
epithelial to mesenchymal transition
lymphangiogenesis
B-1a B cell differentiation
heart valve morphogenesis
aortic valve morphogenesis
pulmonary valve morphogenesis
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
calcium ion transport
heart development
positive regulation of gene expression
transition between fast and slow fiber
osteoclast differentiation
calcineurin-NFAT signaling cascade
intracellular signal transduction
regulation of hair cycle
negative regulation of osteoblast differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
ventricular septum morphogenesis
branching involved in lymph vessel morphogenesis
heart trabecula morphogenesis
negative regulation of stem cell proliferation

Function(s)

transcription cis-regulatory region binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
DNA-binding transcription factor activity, RNA polymerase II-specific
transcription coactivator binding
DNA-binding transcription repressor activity, RNA polymerase II-specific
DNA binding
chromatin binding
protein binding
transcription factor binding
sequence-specific DNA binding
mitogen-activated protein kinase p38 binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR1800012405.rn.1	TC1800001780.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800012416.rn.1	TC1800001780.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800012415.rn.1	TC1800001780.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800012418.rn.1	TC1800001780.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800012413.rn.1	TC1800001780.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800012404.rn.1	TC1800001780.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800012417.rn.1	TC1800001780.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800012407.rn.1	TC1800001780.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800012414.rn.1	TC1800001780.rn.1	RTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21670588	-	-