Rn04337377_g1

• Gene Symbol: Smndc1
• Gene Name: survival motor neuron domain containing 1
• Gene Aliases: -
• Chromosome Location: Chr.1: 274096068 - 274107138 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Smndc1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_051995.1		3 - 4	452		92
GenBank mRNA	BC098697.1	-	3 - 4	414		92

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CV079665.1	-		413		Chr. - - [-] on Build	92
GenBankmRNA	CB792817.1	-		400		Chr. - - [-] on Build	92
GenBankmRNA	BI288396.1	-				Chr. - - [-] on Build	92

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	MAX interactor 1	Mxi1	MXI-WR	-10.0kb	Anti-sense	Chr. 1 - 274030748 - 274090071 on NCBI Build Rnor_6.0
Downstream	dual specificity phosphatase 5	Dusp5	Cpg21	144.2kb	Anti-sense	Chr. 1 - 274245184 - 274258595 on NCBI Build Rnor_6.0

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100007904.rn.1

• Set Membership: Amplicon length between 86 and 100, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

spliceosomal complex assembly
apoptotic process

Function(s)

RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0100063756.rn.1	TC0100007904.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100063762.rn.1	TC0100007904.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100063772.rn.1	TC0100007904.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100063753.rn.1	TC0100007904.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100063768.rn.1	TC0100007904.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100063763.rn.1	TC0100007904.rn.1	RTA TC