Ss03379644_u1 Best Coverage

• Gene Symbol: SNCA
• Gene Name: synuclein alpha
• Gene Aliases: -
• Chromosome Location: Chr.8: 129247724 - 129388307 on Build Sscrofa11.1
• Species: Pig
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SNCA
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001037145.1	NP_001032222.1	5	454		95
	XM_005666989.3	XP_005667046.1		738		95
	XM_005666990.2	XP_005667047.1		560		95
	XM_005666991.3	XP_005667048.1		576		95
	XM_013979018.2	XP_013834472.1		825		95
	XM_013979019.2	XP_013834473.1		514		95
	XM_013979020.2	XP_013834474.1		645		95
	XM_013979021.2	XP_013834475.1		470		95
	XM_013979022.2	XP_013834476.1		466		95
	XM_013979023.2	XP_013834477.1		469		95
	XM_021100513.1	XP_020956172.1		521		95
	XM_021100514.1	XP_020956173.1		398		95
GenBank mRNA	AK389891.1	-	5	527		95
	DQ073395.1	-	5	454		95

More Information

• Set Membership: Amplicon length between 86 and 100, 3' Most, Recommended Assay, Sus scrofa, Inventoried, Amplicon spans exons and probe does not span exons

Panther Classification:

Molecular Function -

membrane trafficking regulatory protein

Gene Ontology Categories:

Process(es)

microglial cell activation
positive regulation of receptor recycling
positive regulation of neurotransmitter secretion
synaptic transmission, dopaminergic
fatty acid metabolic process
neutral lipid metabolic process
phospholipid metabolic process
apoptotic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
mitochondrial membrane organization
adult locomotory behavior
response to iron(II) ion
regulation of phospholipase activity
negative regulation of platelet-derived growth factor receptor signaling pathway
regulation of glutamate secretion
regulation of dopamine secretion
synaptic vesicle priming
regulation of transmembrane transporter activity
negative regulation of microtubule polymerization
receptor internalization
protein destabilization
response to magnesium ion
negative regulation of transporter activity
response to lipopolysaccharide
negative regulation of monooxygenase activity
positive regulation of peptidyl-serine phosphorylation
response to interferon-gamma
cellular response to oxidative stress
negative regulation of histone acetylation
SNARE complex assembly
positive regulation of SNARE complex assembly
regulation of locomotion
dopamine biosynthetic process
response to drug
mitochondrial ATP synthesis coupled electron transport
regulation of macrophage activation
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
negative regulation of neuron apoptotic process
positive regulation of endocytosis
negative regulation of exocytosis
positive regulation of exocytosis
regulation of long-term neuronal synaptic plasticity
synaptic vesicle endocytosis
synaptic vesicle transport
positive regulation of inflammatory response
synapse organization
regulation of acyl-CoA biosynthetic process
protein tetramerization
positive regulation of release of sequestered calcium ion into cytosol
negative regulation of dopamine uptake involved in synaptic transmission
negative regulation of serotonin uptake
negative regulation of norepinephrine uptake
excitatory postsynaptic potential
long-term synaptic potentiation
positive regulation of inositol phosphate biosynthetic process
negative regulation of thrombin receptor signaling pathway
response to interleukin-1
cellular response to copper ion
positive regulation of protein serine/threonine kinase activity
positive regulation of neuron death
positive regulation of glutathione peroxidase activity
positive regulation of hydrogen peroxide catabolic process
negative regulation of chaperone-mediated autophagy
regulation of presynapse assembly

Function(s)

SNARE binding
magnesium ion binding
actin binding
copper ion binding
calcium ion binding
phospholipid binding
ferrous iron binding
zinc ion binding
oxidoreductase activity
kinesin binding
Hsp70 protein binding
histone binding
identical protein binding
alpha-tubulin binding
cysteine-type endopeptidase inhibitor activity involved in apoptotic process
tau protein binding
arachidonic acid binding
phosphoprotein binding
dynein complex binding
cuprous ion binding