54578

• Gene Symbol: Ctcf
• Gene Name: CCCTC-binding factor (zinc finger protein)
• Gene Aliases: -
• Chromosome Location: Chr.19: 37600377 - 37649674 on Build Rnor_6.0
• UniGene ID: Rn.18612
• Species: Rat
• Species Specific ID (Flybase ID): -

siRNA Details

Gene Symbol: Ctcf
Interrogated Sequence		Translated Protein	Targeted Exon(s)	siRNA Location	IMAGE Clone ID
RefSeq	NM_031824.1	NP_114012.1	3, 4	957
	XM_006255536.1	XP_006255598.1	2, 3	907
	XM_008772536.1	XP_008770758.1	1, 2	924
	XM_008772537.1	XP_008770759.1	1, 2	924
	XM_008772538.1	XP_008770760.1	1, 2	924
	XM_008772539.1	XP_008770761.1	1, 2	924
GenBank mRNA	AF133731.2	-	3, 4	993

More Information

Other Species Targeted

This siRNA also targets the following transcripts in Mouse: NM_181322, U51037, BC058240, BC046398, AK132514, and others.

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
DNA methylation
regulation of gene expression by genetic imprinting
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
chromosome segregation
maintenance of DNA methylation
positive regulation of gene expression
negative regulation of gene expression
chromatin modification
nucleosome positioning
regulation of histone methylation
regulation of histone acetylation
regulation of gene expression, epigenetic
regulation of molecular function, epigenetic
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
chromatin insulator sequence binding
sequence-specific DNA binding
transcription regulatory region DNA binding
metal ion binding