SCARNA22
Genomic Map
Back To TopAssay Details
| Gene Symbol: SCARNA22 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_003004.1 | 1 | 63 | 76 | ||
| GenBank mRNA | AJ609470.1 | - | 1 | 63 | 76 | |
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Transcript Location | Amplicon Length | |
|---|---|---|---|---|---|---|---|
| GenBankmRNA | AV744827.1 | - | 109 | Chr. - - [-] on Build | 76 | ||
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | Wolf-Hirschhorn syndrome candidate 1 | WHSC1 |
MMSET, NSD2, REIIBP, TRX5, WHS |
Sense | Chr. 4 - 1871357 - 1982207 on NCBI Build GRCh38 | |
| Downstream | negative elongation factor complex member A | NELFA |
NELF-A, P/OKcl.15, WHSC2 |
8.0kb | Anti-sense | Chr. 4 - 1982714 - 2009972 on NCBI Build GRCh38 |
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Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC0400006549.hg.1This assay targets the same location as HTA transcript cluster(s) TC04000031.hg.1
Set Membership: |
Amplicon length between 71 and 85
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4023 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4024 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891837 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891852 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038311 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038321 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891871 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038304 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891862 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891846 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891859 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038296 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038292 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891868 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038294 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891849 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038318 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891854 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038297 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891863 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891864 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891872 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891853 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038299 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891857 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891848 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891870 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891836 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891861 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038289 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891844 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038318 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891844 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891864 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891857 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038292 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891852 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891849 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038304 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038296 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891861 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891836 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891872 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891853 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891870 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891862 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891837 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038294 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891846 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038299 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038321 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038311 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891848 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038297 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891868 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891871 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P23038289 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891863 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891859 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02891854 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891854 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891846 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891869 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891857 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891859 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891868 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891848 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891844 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891842 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891870 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891840 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891861 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891838 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891865 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15534258 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891843 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02891852 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | NR_003004_at | - | - |
| Affymetrix Human Gene 1.0 ST Array | 8093577 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 8093576 | - | - |
| Affymetrix Human Transcriptome Array 2.0 | PSR04000753.hg.1 | ENST00000503991.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR04000753.hg.1 | ENST00000516197.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR04000753.hg.1 | NR_003004.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR04000753.hg.1 | TC04000031.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | TC0400006549.hg.1 | ENST00000503991.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0400006549.hg.1 | NR_003004.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0400006549.hg.1 | ENST00000503991.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0400006549.hg.1 | NR_003004.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0400145067.hg.1 | ENST00000503991.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0400145067.hg.1 | NR_003004.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0400145067.hg.1 | TC0400006549.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0400145067.hg.1 | NR_003004.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0400145067.hg.1 | ENST00000503991.1 | Ensembl |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A025169 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A025169 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3238358 | NR_003004.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_3238358 | AJ609470.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3238358 | NR_003004.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3238358 | AJ609470.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3238358 | NR_003004.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3238358 | AJ609470.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3238358 | NR_003004.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3238358 | AJ609470.1 | human_transcriptome |
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