Assay Details

Gene Symbol: PCDHB18P
Interrogated Sequence		Translated Protein	RNADB ID	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_001281.2			1	371		62
GenBank mRNA	AF152528.1	-	LIT2076 PCDH-psi2	1	153		62
	AK095496.1	-		1	340		62
	DA121078.1	-		1	372		62

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	DA529211.1	-	1	371	Chr. 5 - 141234333 - 141234933 [+] on Build GRCh38	62
GenBankmRNA	DA125678.1	-	1	352	Chr. 5 - 141234352 - 141234868 [+] on Build GRCh38	62
GenBankmRNA	DA777160.1	-		517	Chr. - - [-] on Build	62
GenBankmRNA	DA483092.1	-	1	340	Chr. 5 - 141234366 - 141235129 [+] on Build GRCh38	62
GenBankmRNA	DA186145.1	-	1	371	Chr. 5 - 141234334 - 141234873 [+] on Build GRCh38	62
GenBankmRNA	DB175121.1	-	1	370	Chr. 5 - 141234335 - 141234900 [+] on Build GRCh38	62
GenBankmRNA	DB240188.1	-	1	354	Chr. 5 - 141234352 - 141234922 [+] on Build GRCh38	62
GenBankmRNA	DB099748.1	-	1	369	Chr. 5 - 141234335 - 141234877 [+] on Build GRCh38	62

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	protocadherin beta 14	PCDHB14	PCDH-BETA14	-8.3kb	Sense	Chr. 5 - 141222326 - 141226288 on NCBI Build GRCh38
Downstream	protocadherin beta 19 pseudogene	PCDHB19P	PCDH-PSI5, PCDHB19	3.2kb	Sense	Chr. 5 - 141240121 - 141244752 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500008886.hg.1
This assay targets the same location as HTA transcript cluster(s) TC05000758.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK095496.1 transcripts.

Set Membership:

Amplicon length less than or equal to 70

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR05010854.hg.1	TC05000758.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR05010854.hg.1	ENST00000526308.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05010854.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161841.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161841.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161841.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161841.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161841.hg.1	TC0500008886.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500161842.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161842.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161842.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161842.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161842.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161842.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161842.hg.1	TC0500008886.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500161844.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161844.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161844.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161844.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161844.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161844.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161844.hg.1	TC0500008886.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500161846.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161846.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161846.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161846.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161846.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161846.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161846.hg.1	TC0500008886.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500161845.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161845.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161845.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161845.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161845.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161845.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161845.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161845.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161845.hg.1	TC0500008886.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	TC0500008886.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161843.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161843.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161843.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161843.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161843.hg.1	ENST00000524813.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161843.hg.1	ENST00000526308.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161843.hg.1	ENST00000622990.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161843.hg.1	NR_001281.2	Refseq
Affymetrix Human Clariom D Assay	PSR0500161843.hg.1	TC0500008886.hg.1	Clariom D TC

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Genomic Map