Assay Details

Gene Symbol: LSP1P3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_033961.1		1	123		95
GenBank mRNA	BC121073.2	-	1	127	40119616	95
GenBank mRNA	BC121074.2	-	1	127	40119620	95

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BC034574.1	-	1			Chr. 5 - 28925598 - 28927589 [-] on Build GRCh38	95

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC105374698	LOC105374698		-639.1kb	Anti-sense	Chr. 5 - 28286389 - 28287665 on NCBI Build GRCh38
Downstream	uncharacterized LOC101929645	LOC101929645		137.9kb	Sense	Chr. 5 - 29065244 - 29073223 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500007016.hg.1
This assay targets the same location as HTA transcript cluster(s) TC05000127.hg.1

Additional Information:

This assay is in the 5'UTR region of the BC121073.2 transcripts.

Set Membership:

Amplicon length between 86 and 100

3' Most

Mammalian Gene Collection

Detect Genomic DNA

Homo sapiens

1700

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ArrayStar ABI Illumina

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	8104657	-	-
Affymetrix Human Gene 1.1 ST Array	8104656	-	-
Affymetrix Human Transcriptome Array 2.0	PSR05001253.hg.1	NR_033961.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR05001253.hg.1	TC05000127.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0500147383.hg.1	ENST00000412374.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500147383.hg.1	NR_033961.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500147383.hg.1	TC0500007016.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500147383.hg.1	NR_033961.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500147383.hg.1	ENST00000412374.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500147381.hg.1	ENST00000449530.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500147381.hg.1	NR_033961.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500147381.hg.1	TC0500007016.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500147381.hg.1	ENST00000449530.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500147381.hg.1	NR_033961.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500147384.hg.1	NR_033961.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500147384.hg.1	TC0500007016.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500147384.hg.1	NR_033961.1	Refseq

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Array Name	Probe IDs	Targets	Target Type
Agilent Human Whole Genome ChIP Tiling Array	A_17_P15678093	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24011960	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24011963	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24011959	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24011958	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24011962	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24011972	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03841567	-	-

Array Name	Probe IDs	Targets	Target Type
Arraystar Human LncRNA microarray V2.0	ASHG19A3A028049	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A028050	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A028049	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A028050	-	-

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