LOC100287015
Genomic Map
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| Gene Symbol: LOC100287015 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_040040.1 | 2 | 2320 | 79 | ||
| GenBank mRNA | AK025595.1 | - | 2 | 2318 | 79 | |
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | CUB and Sushi multiple domains 1 | CSMD1 | PPP1R24 | -1.4mb | Sense | Chr. 8 - 2935353 - 4995035 on NCBI Build GRCh38 |
| Downstream | microcephalin 1 | MCPH1 |
BRIT1, MCT |
1.5kb | Anti-sense | Chr. 8 - 6406592 - 6648505 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC0800009415.hg.1This assay targets the same location as HTA transcript cluster(s) TC08000901.hg.1
Set Membership: |
Amplicon length between 71 and 85
3' Most
Detect Genomic DNA
Homo sapiens
1700
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
ABI
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P05938268 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P26211736 | - | - |
| Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M | 621572 | - | - |
| Agilent Human CGH Whole Genome Microarray 1x1M (G4447A) | A_18_P16370236 | - | - |
| Agilent Human 2 cDNA Microarray (G4101A) | 2763370 | - | - |
| Agilent Human 2 cDNA Microarray (G4101A) | 2763370 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix HT HG-U133+ PM Array Plate | 1556301_PM_at | - | - |
| Affymetrix Human Transcriptome Array 2.0 | PSR08011836.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR08011836.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR08011836.hg.1 | TC08000901.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR08011835.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR08011835.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR08011835.hg.1 | TC08000901.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR08011833.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR08011833.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR08011833.hg.1 | TC08000901.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0800009415.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0800164455.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164455.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164455.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164455.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0800164455.hg.1 | TC0800009415.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0800164455.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164455.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164455.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164455.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0800164449.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164449.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0800164449.hg.1 | TC0800009415.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0800164449.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164449.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0800164451.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164451.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0800164451.hg.1 | TC0800009415.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0800164451.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164451.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0800164456.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164456.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164456.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0800164456.hg.1 | TC0800009415.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0800164456.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164456.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0800164456.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000500118.2 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000523225.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | ENST00000606853.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | NR_040040.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0800009415.hg.1 | NR_040040.1 | Refseq |
| Human Genome U133 Plus 2.0 Array | 233174_PM_at | - | - |
| Human Genome U133 Plus 2.0 Array | 233174_at | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at6 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at10 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at7 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at11 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at3 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at9 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at4 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at5 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at1 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at2 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 233174_at8 | - | - |
| Human Genome U95 Set | 83672_at | - | - |
| Human Genome U95 Set | 83672_PM_at | - | - |
| Human Genome U133 Set | 233174_at | - | - |
| Human Genome U133 Set | 233174_PM_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A035463 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A035463 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Human Genome Survey Microarray Version 2.0 | 347199 | - | - |
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