Name: [Hs04405329_m1] [LINC01563]
Creator: Thermo Fisher Scientific
Keywords: [LINC01563] Assay, [long intergenic non-protein coding RNA 1563] Assay

Assay Details

Gene Symbol: LINC01563
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_110896.1		1 - 2	401		86
GenBank mRNA	AV723259.1	-	1 - 2	401		86

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	CV569314.1	-	1 - 2	261	Chr. 17 - 21075696 - 21090566 [+] on Build GRCh38	86
GenBankmRNA	BF727392.1	-	1 - 2	357	Chr. 17 - 21075600 - 21090378 [+] on Build GRCh38	86
GenBankmRNA	BF303661.1	-	1 - 2	327	Chr. 17 - 21075630 - 21090530 [+] on Build GRCh38	85
GenBankmRNA	BF727391.1	-	1 - 2		Chr. 17 - 21075832 - 21090538 [-] on Build GRCh38	86

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ubiquitin specific peptidase 22	USP22	USP3L	-32.1kb	Anti-sense	Chr. 17 - 20999593 - 21043409 on NCBI Build GRCh38
Downstream	dehydrogenase/reductase 7B	DHRS7B	CGI-93, SDR32C1	35.7kb	Sense	Chr. 17 - 21123369 - 21191972 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1700007252.hg.1

Set Membership:

Amplicon length between 71 and 85

Amplicon length between 86 and 100

3' Most

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1700007252.hg.1	ENST00000456235.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700007252.hg.1	ENST00000456235.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700007252.hg.1	NR_110895.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700007252.hg.1	NR_110895.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700007252.hg.1	NR_110895.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700007252.hg.1	NR_110895.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700007252.hg.1	NR_110896.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1700007252.hg.1	NR_110896.1	Refseq
Affymetrix Human Clariom D Assay	TC1700007252.hg.1	ENST00000456235.1	Ensembl
Affymetrix Human Clariom D Assay	TC1700007252.hg.1	ENST00000456235.1	Ensembl
Affymetrix Human Clariom D Assay	TC1700007252.hg.1	NR_110895.1	Refseq
Affymetrix Human Clariom D Assay	TC1700007252.hg.1	NR_110895.1	Refseq
Affymetrix Human Clariom D Assay	TC1700007252.hg.1	NR_110895.1	Refseq
Affymetrix Human Clariom D Assay	TC1700007252.hg.1	NR_110895.1	Refseq
Affymetrix Human Clariom D Assay	TC1700007252.hg.1	NR_110896.1	Refseq
Affymetrix Human Clariom D Assay	TC1700007252.hg.1	NR_110896.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700151568.hg.1	ENST00000456235.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700151568.hg.1	NR_110895.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700151568.hg.1	NR_110896.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700151568.hg.1	ENST00000456235.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700151568.hg.1	NR_110895.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700151568.hg.1	NR_110896.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700151568.hg.1	TC1700007252.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1700151577.hg.1	ENST00000456235.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700151577.hg.1	NR_110895.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700151577.hg.1	NR_110896.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700151577.hg.1	ENST00000456235.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700151577.hg.1	NR_110895.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700151577.hg.1	NR_110896.1	Refseq
Affymetrix Human Clariom D Assay	PSR1700151577.hg.1	TC1700007252.hg.1	Clariom D TC

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Catalog #	4426961
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System Message

Genomic Map