Name: [Hs04405722_m1] [CASC21]
Creator: Thermo Fisher Scientific
Keywords: [CASC21] Assay, [cancer susceptibility candidate 21 (non-protein coding)] Assay

Assay Details

Gene Symbol: CASC21
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_117099.1		3 - 4	455		69
GenBank mRNA	JX003867.1	-	1 - 2	160		69

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CB104826.1	-	2 - 3	205		Chr. 8 - 126557880 - 127392631 [+] on Build GRCh38	69

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	colon cancer associated transcript 1 (non-protein coding)	CCAT1	CARLo-5, onco-lncRNA-40	-120.0kb	Anti-sense	Chr. 8 - 127207382 - 127219268 on NCBI Build GRCh38
Downstream	colon cancer associated transcript 2 (non-protein coding)	CCAT2	LINC00873, NCCP1	7.8kb	Sense	Chr. 8 - 127400399 - 127402150 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0800008836.hg.1

Set Membership:

Amplicon length less than or equal to 70

3' Most

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0800008836.hg.1	ENST00000521586.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0800008836.hg.1	ENST00000521586.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0800008836.hg.1	NR_117099.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0800008836.hg.1	NR_117099.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0800008836.hg.1	NR_117099.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0800008836.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160454.hg.1	ENST00000521586.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0800160454.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160454.hg.1	ENST00000521586.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0800160454.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160454.hg.1	TC0800008836.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0800160455.hg.1	ENST00000521586.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0800160455.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160455.hg.1	ENST00000521586.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0800160455.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160455.hg.1	TC0800008836.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0800160452.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160452.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160452.hg.1	TC0800008836.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0800008836.hg.1	ENST00000521586.1	Ensembl
Affymetrix Human Clariom D Assay	TC0800008836.hg.1	ENST00000521586.1	Ensembl
Affymetrix Human Clariom D Assay	TC0800008836.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	TC0800008836.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	TC0800008836.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	TC0800008836.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160451.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160451.hg.1	NR_117099.1	Refseq
Affymetrix Human Clariom D Assay	PSR0800160451.hg.1	TC0800008836.hg.1	Clariom D TC

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System Message

Genomic Map