Name: [Hs04407512_s1] [LINC01560]
Creator: Thermo Fisher Scientific
Keywords: [LINC01560] Assay, [long intergenic non-protein coding RNA 1560] Assay

Assay Details

Gene Symbol: LINC01560
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_126059.1		1	215		94
GenBank mRNA	DB481712.1	-	1	215		94

Gene Symbol: ZNF41
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_017029815.1	XP_016885304.1	1			94

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	DB108025.1	-	1	277	Chr. X - 47482654 - 47483240 [+] on Build GRCh38	94
GenBankmRNA	DA690213.1	-	1	77	Chr. X - 47482854 - 47483390 [+] on Build GRCh38	94
GenBankmRNA	DB270039.1	-	1	307	Chr. X - 47482624 - 47483166 [+] on Build GRCh38	94
GenBankmRNA	HY072952.1	-	1	278	Chr. X - 47482654 - 47482974 [+] on Build GRCh38	94

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	zinc finger protein 157	ZNF157	HZF22	-69.0kb	Sense	Chr. X - 47370600 - 47413699 on NCBI Build GRCh38
Downstream	A-Raf proto-oncogene, serine/threonine kinase	ARAF	A-RAF, ARAF1, PKS2, RAFA1	75.9kb	Sense	Chr. X - 47561100 - 47571921 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0X00007144.hg.1

Additional Information:

This assay is in the 5'UTR region of the XM_017029815.1 transcripts.

Set Membership:

Amplicon length between 86 and 100

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	PSR0X00148696.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00148696.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00148696.hg.1	TC0X00007144.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000313116.11	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000377065.8	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000432977.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	ENST00000465311.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_007130.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq
Affymetrix Human Clariom D Assay	TC0X00009569.hg.1	NM_153380.3	Refseq

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System Message

Genomic Map