Name: [Mm01180775_m1] [Snhg3]
Creator: Thermo Fisher Scientific
Keywords: [Snhg3] Assay, [small nucleolar RNA host gene 3] Assay

Assay Details

Gene Symbol: Snhg3
Interrogated Sequence		Translated Protein	RNADB ID	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003270.2			1 - 2	91		84
GenBank mRNA	AJ006837.1	-	LIT1313 U17HG	1 - 2	38		84
	AK076188.1	-		1 - 2	39		84
	BC100513.1	-		1 - 2	84		84
	CN834544.1	-		1 - 2	94		84

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	BY118222.1	-	1 - 2	74	Chr. 4 - 132352005 - 132353668 [-] on Build GRCm38	84
GenBankmRNA	CN841655.1	-	1 - 2	87	Chr. 4 - 132351934 - 132353679 [-] on Build GRCm38	84
GenBankmRNA	DV069876.1	-		107	Chr. - - [-] on Build	84
GenBankmRNA	DV069651.1	-		58	Chr. - - [-] on Build	84
GenBankmRNA	DV061498.1	-		136	Chr. - - [-] on Build	84
GenBankmRNA	CA460116.1	-		128	Chr. - - [-] on Build	84
GenBankmRNA	DV062701.1	-		159	Chr. - - [-] on Build	84
GenBankmRNA	AI787530.1	-	1 - 2	37	Chr. 4 - 132351934 - 132353632 [-] on Build GRCm38	84
GenBankmRNA	CA456802.1	-		105	Chr. - - [-] on Build	84
GenBankmRNA	BY144490.1	-	1 - 2	35	Chr. 4 - 132351966 - 132353630 [-] on Build GRCm38	84
GenBankmRNA	BY121084.1	-	1 - 2	74	Chr. 4 - 132352035 - 132353668 [-] on Build GRCm38	84
GenBankmRNA	BX639589.1	-	2 - 3		Chr. 4 - 132351934 - 132353658 [+] on Build GRCm38	84
GenBankmRNA	DV072144.1	-		58	Chr. - - [-] on Build	84
GenBankmRNA	BE198161.1	-	1 - 2	65	Chr. 4 - 132352117 - 132353660 [-] on Build GRCm38	84
GenBankmRNA	CA492396.1	-		75	Chr. - - [-] on Build	84
GenBankmRNA	CJ090087.1	-		33	Chr. - - [-] on Build	84
GenBankmRNA	BY713659.1	-	1 - 2	33	Chr. 4 - 132351933 - 132353628 [-] on Build GRCm38	84
GenBankmRNA	AI788223.1	-	1 - 2	37	Chr. 4 - 132351934 - 132353632 [-] on Build GRCm38	84
GenBankmRNA	BY792896.1	-	1 - 2	69	Chr. 4 - 132348014 - 132353663 [-] on Build GRCm38	84
GenBankmRNA	BY121260.1	-	1 - 2	74	Chr. 4 - 132352022 - 132353668 [-] on Build GRCm38	84
GenBankmRNA	DV041333.1	-		133	Chr. - - [-] on Build	84
GenBankmRNA	EL964328.1	-	2 - 3		Chr. 4 - 132351934 - 132353658 [+] on Build GRCm38	84

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	small nucleolar RNA, H/ACA box 73b	Snora73b	U17B	-137.0	Sense	Chr. 4 - 132352322 - 132352526 on NCBI Build GRCm38
Downstream	phosphatase and actin regulator 4	Phactr4	3110001B12Rik, AI527228, AW495572, C330013F19Rik, N28169, mKIAA4120	2.3kb	Sense	Chr. 4 - 132355922 - 132422446 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0400004223.mm.1
This assay targets the same location as RTA transcript cluster(s) TC1600001201.rn.1

Set Membership:

Amplicon length between 71 and 85

Mammalian Gene Collection

Mus musculus

Probe spans exons

MicroArray Probes:

Affymetrix

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Catalog #	4426961
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Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0400030087.mm.1	TC0400004223.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400030087.mm.1	NR_003270.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400030087.mm.1	NR_003270.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0400035210.mm.1	TC0400004223.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400035210.mm.1	NR_003270.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400035210.mm.1	NR_003270.2	Refseq

System Message

Genomic Map