Name: [Mm03049277_m1] [Pantr1]
Creator: Thermo Fisher Scientific
Keywords: [Pantr1] Assay, [POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1] Assay

Assay Details

Gene Symbol: Pantr1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_027826.1		1 - 2	80		82
GenBank mRNA	AK011437.1	-	1 - 2	80		82
	AK019154.1	-	1 - 2	80		82
	BC094545.1	-		60		82

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	NM_183252.1	-		80		Chr. - - [-] on Build	82
GenBankmRNA	BU562288.1	-	1 - 2	82		Chr. 1 - 42648198 - 42694827 [-] on Build GRCm38	82

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	RIKEN cDNA 4930448I06 gene	4930448I06Rik		-1.5mb	Sense	Chr. 1 - 41167560 - 41181252 on NCBI Build GRCm38
Downstream	POU domain, class 3, transcription factor 3	Pou3f3	Brn-1, Brn1, Otf8, Skin1	2.3kb	Anti-sense	Chr. 1 - 42697146 - 42700210 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0100002257.mm.1

Additional Information:

This assay is in the 5'UTR region of the AK011437.1,AK019154.1 transcripts.

Set Membership:

Ambion siRNA available

Amplicon length between 71 and 85

Mammalian Gene Collection

Mus musculus

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pantr1

MicroArray Probes:

Affymetrix

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Catalog #	4426961
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Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0100018143.mm.1	NR_027826.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100018143.mm.1	NR_027826.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100018143.mm.1	TC0100002257.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0100018136.mm.1	NR_027826.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100018136.mm.1	NR_027826.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100018136.mm.1	TC0100002257.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0100018135.mm.1	NR_027826.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100018135.mm.1	NR_027826.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100018135.mm.1	TC0100002257.mm.1	MTA TC

System Message

Genomic Map