Name: [Mm03929372_m1] [AV039307]
Creator: Thermo Fisher Scientific
Keywords: [AV039307] Assay, [expressed sequence AV039307] Assay

Assay Details

Gene Symbol: AV039307
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038350.1		1 - 2	112		94
GenBank mRNA	AK006022.1	-	1 - 2	64		94

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BY706142.1	-	1 - 2	61		Chr. 2 - 120850707 - 120863343 [+] on Build GRCm38	94

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ubiquitin protein ligase E3 component n-recognin 1	Ubr1	AI504731		Anti-sense	Chr. 2 - 120860272 - 120970729 on NCBI Build GRCm38
Downstream	transmembrane protein 62	Tmem62	B830009D23Rik, C77355	114.4kb	Sense	Chr. 2 - 120976719 - 121007849 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0200001799.mm.1

Additional Information:

This assay is in the 5'UTR region of the AK006022.1 transcripts.

Set Membership:

Amplicon length between 86 and 100

3' Most

Mus musculus

Probe spans exons

MicroArray Probes:

Agilent Affymetrix

Array Name	Probe IDs	Targets	Target Type
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	875788	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	48794	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	281403	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	233588	-	-
Agilent SurePrint G3 Mouse CGH Microarray 4x180K	1833	-	-
Agilent Mouse Genome CGH Microarray 44K G4426B	A_53_P101151	-	-
Agilent Mouse Genome CGH Microarray 44K G4426B	A_53_P112545	-	-
Agilent Mouse Genome CGH Microarray 244A (G4415A)	A_53_P101151	-	-
Agilent Mouse Genome CGH Microarray 105A (G4416A)	A_53_P101151	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT MG-430 PM Array Plate	1430325_PM_at	-	-
Mouse Genome 430 2.0 Array	1431264_PM_at	-	-
Mouse Genome 430 2.0 Array	1430325_PM_at	-	-
Mouse Genome 430 2.0 Array	1431264_at	-	-
Mouse Genome 430 2.0 Array	1430325_at	-	-
Affymetrix Mouse Clariom S Array	PSR0200013835.mm.1	TC0200001799.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200013835.mm.1	NR_038349.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200013835.mm.1	NR_038349.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200013835.mm.1	NR_038350.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200013835.mm.1	NR_038350.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200013840.mm.1	TC0200001799.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200013840.mm.1	NR_038350.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200013840.mm.1	NR_038350.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200013841.mm.1	TC0200001799.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200013841.mm.1	NR_038349.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200013841.mm.1	NR_038349.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200013841.mm.1	NR_038350.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200013841.mm.1	NR_038350.1	Refseq
Mouse Expression Set 430	1431264_PM_at	-	-
Mouse Expression Set 430	1430325_PM_at	-	-
Mouse Expression Set 430	1431264_at	-	-
Mouse Expression Set 430	1430325_at	-	-
Murine Genome U74v2 Set	167485_PM_at	-	-
Murine Genome U74v2 Set	167008_PM_i_at	-	-
Murine Genome U74v2 Set	167008_i_at	-	-
Murine Genome U74v2 Set	167485_at	-	-
Affymetrix HT Mouse Genome 430B Array	1430325_at	-	-
Affymetrix HT Mouse Genome 430B Array	1430325_PM_at	-	-

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