Name: [Mm03954554_s1] [3110021A11Rik]
Creator: Thermo Fisher Scientific
Keywords: [3110021A11Rik] Assay, [RIKEN cDNA 3110021A11 gene] Assay

Assay Details

Gene Symbol: 3110021A11Rik
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_030776.1		1	646		65
GenBank mRNA	AK014066.1	-	1	647		65
GenBank mRNA	AK014105.1	-	1	629		65

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	BB808179.1	-	1	77	Chr. 6 - 119848770 - 119849010 [+] on Build GRCm38	65
GenBankmRNA	BE287660.1	-	1	71	Chr. 6 - 119848768 - 119849019 [+] on Build GRCm38	65
GenBankmRNA	AV021134.1	-	1	81	Chr. 6 - 119848758 - 119849010 [+] on Build GRCm38	65
GenBankmRNA	BX517302.1	-	1	92	Chr. 6 - 119848747 - 119849029 [+] on Build GRCm38	65
GenBankmRNA	AV164142.1	-	1	125	Chr. 6 - 119848714 - 119849009 [+] on Build GRCm38	65

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	wingless-type MMTV integration site family, member 5B	Wnt5b	AW545702, Wnt-5b	-303.4kb	Anti-sense	Chr. 6 - 119432531 - 119544824 on NCBI Build GRCm38
Downstream	RAD52 homolog (S. cerevisiae)	Rad52	Rad52yh	53.2kb	Sense	Chr. 6 - 119902207 - 119922823 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0600001338.mm.1

Set Membership:

Amplicon length less than or equal to 70

3' Most

Detect Genomic DNA

Mus musculus

Both primers and probe map within a single exon

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Agilent Affymetrix Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Mouse Genome Microarray 4x44K v2	A_51_P133638	NR_030776.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_51_P133638	AK014066.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_51_P133638	AK014105.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_51_P133638	NR_030776.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_51_P133638	AK014066.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_51_P133638	AK014105.1	mouse_transcriptome
Agilent Mouse Genome CGH Microarray 44K G4426B	A_53_P150049	-	-
Agilent Mouse Genome CGH Microarray 244A (G4415A)	A_53_P150049	-	-
Agilent Mouse Developmental Microarray 44K G2519A Option 002	A_66_P121337	-	-
Agilent Mouse Genome CGH Microarray 105A (G4416A)	A_53_P150049	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT MG-430 PM Array Plate	1445708_PM_x_at	-	-
Affymetrix HT MG-430 PM Array Plate	1430158_PM_at	-	-
Affymetrix Mouse Gene 1.1 ST Array	10541186	-	-
Mouse Genome 430 2.0 Array	1445708_PM_x_at	-	-
Mouse Genome 430 2.0 Array	1445708_x_at	-	-
Mouse Genome 430 2.0 Array	1430158_PM_at	-	-
Mouse Genome 430 2.0 Array	1430158_at	-	-
Affymetrix Mouse Clariom S Array	PSR0600010625.mm.1	TC0600001338.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600010625.mm.1	NR_030776.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600010625.mm.1	NR_030776.1	Refseq
Mouse Expression Set 430	1430158_PM_at	-	-
Mouse Expression Set 430	1445708_x_at	-	-
Mouse Expression Set 430	1445708_PM_x_at	-	-
Mouse Expression Set 430	1430158_at	-	-
Murine Genome U74v2 Set	165855_PM_at	-	-
Murine Genome U74v2 Set	165855_at	-	-
Affymetrix HT Mouse Genome 430B Array	1445708_PM_x_at	-	-
Affymetrix HT Mouse Genome 430B Array	1445708_x_at	-	-
Affymetrix HT Mouse Genome 430B Array	1430158_at	-	-
Affymetrix HT Mouse Genome 430B Array	1430158_PM_at	-	-

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Catalog #	4426961
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System Message

Genomic Map