Name: [Mm04242407_s1] [2900097C17Rik]
Creator: Thermo Fisher Scientific
Keywords: [2900097C17Rik] Assay, [RIKEN cDNA 2900097C17 gene] Assay

Assay Details

Gene Symbol: 2900097C17Rik
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_024329.1		1	2650		93
GenBank mRNA	AK007344.1	-	1	740		93
GenBank mRNA	AK077867.1	-	1	2615		93

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	CA315490.1	-	1	263	Chr. 2 - 156389857 - 156390592 [-] on Build GRCm38	93
GenBankmRNA	CF731194.1	-	1	435	Chr. 2 - 156389978 - 156390764 [-] on Build GRCm38	93
GenBankmRNA	BU613737.1	-	1	311	Chr. 2 - 156390033 - 156390640 [-] on Build GRCm38	93
GenBankmRNA	CB520788.1	-	1	123	Chr. 2 - 156389726 - 156390452 [-] on Build GRCm38	93
GenBankmRNA	BM946876.1	-	1	212	Chr. 2 - 156389830 - 156390541 [-] on Build GRCm38	93
GenBankmRNA	CJ054805.1	-	1	179	Chr. 2 - 156390074 - 156390508 [-] on Build GRCm38	93
GenBankmRNA	CN460524.1	-	1	468	Chr. 2 - 156390090 - 156390797 [-] on Build GRCm38	93
GenBankmRNA	CB523399.1	-	1	312	Chr. 2 - 156389913 - 156390641 [-] on Build GRCm38	93
GenBankmRNA	CD354823.1	-	1	410	Chr. 2 - 156390090 - 156390739 [-] on Build GRCm38	93
GenBankmRNA	BQ715949.1	-	1	91	Chr. 2 - 156389499 - 156390402 [-] on Build GRCm38	93
GenBankmRNA	BB683487.1	-	1	160	Chr. 2 - 156390017 - 156390487 [-] on Build GRCm38	93
GenBankmRNA	CA321477.1	-	1	476	Chr. 2 - 156390113 - 156390807 [-] on Build GRCm38	93
GenBankmRNA	BU559929.1	-	1	659	Chr. 2 - 156390009 - 156390986 [-] on Build GRCm38	93
GenBankmRNA	BB037921.2	-	1	344	Chr. 2 - 156390020 - 156390666 [-] on Build GRCm38	93
GenBankmRNA	CV557946.1	-	1	57	Chr. 2 - 156389617 - 156390386 [-] on Build GRCm38	93
GenBankmRNA	BM964063.1	-	1	72	Chr. 2 - 156389608 - 156390401 [-] on Build GRCm38	93
GenBankmRNA	CF730920.1	-	1	53	Chr. 2 - 156389711 - 156390382 [-] on Build GRCm38	93
GenBankmRNA	BM963612.1	-	1	184	Chr. 2 - 156389732 - 156390513 [-] on Build GRCm38	93

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	cyclic nucleotide binding domain containing 2	Cnbd2	4921517L17Rik, 5430421B09Rik, Cris	-12.4kb	Anti-sense	Chr. 2 - 156312400 - 156375638 on NCBI Build GRCm38
Downstream	erythrocyte protein band 4.1 like 1	Epb4.1l1	4.1N, Epb41l1, NBL1, mKIAA0338	27.5kb	Anti-sense	Chr. 2 - 156420487 - 156543214 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0200004989.mm.1

Set Membership:

Amplicon length between 86 and 100

3' Most

Detect Genomic DNA

Mus musculus

1700

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2089304	AK172483.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2089304	AK016198.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2089304	AK013851.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2089304	AK077867.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2089304	AK136079.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2106961	AK172483.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2106961	AK013851.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2106961	AK077867.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2106961	AK136079.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2106961	NR_024329.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_66_P106606	BC127229.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_66_P106606	NR_024329.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2089310	AK007344.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2089310	AK077867.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2089310	NR_024329.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_66_P106606	BC127229.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_66_P106606	NR_024329.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2089310	AK007344.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2089310	AK077867.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2089310	NR_024329.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2106961	AK172483.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2106961	AK013851.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2106961	AK077867.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2106961	AK136079.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2106961	NR_024329.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2089304	AK172483.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2089304	AK016198.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2089304	AK013851.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2089304	AK077867.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2089304	AK136079.1	mouse_transcriptome
Agilent Mouse Developmental Microarray 44K G2519A Option 002	A_66_P106606	BC127229.1	mouse_transcriptome
Agilent Mouse Developmental Microarray 44K G2519A Option 002	A_66_P106606	NR_024329.1	mouse_transcriptome
Agilent Six_ChIP_01_of_03_v2	A_68_P21770969	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P21770971	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P21770931	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P01469936	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P21770920	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P21770921	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P01264780	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P02269386	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P21770933	-	-
Agilent Six_ChIP_01_of_03_v2	A_68_P21770950	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Gene 1.0 ST Array	10489044	-	-
Affymetrix Mouse Gene 1.0 ST Array	10541090	-	-
Affymetrix HT MG-430 PM Array Plate	1428286_PM_at	-	-
Affymetrix HT MG-430 PM Array Plate	1432646_PM_a_at	-	-
Affymetrix Mouse Gene 1.1 ST Array	10541089	-	-
Affymetrix Mouse Gene 1.1 ST Array	10489043	-	-
Mouse Genome 430 2.0 Array	1432646_a_at	-	-
Mouse Genome 430 2.0 Array	1432646_PM_a_at	-	-
Mouse Genome 430 2.0 Array	1428286_PM_at	-	-
Mouse Genome 430 2.0 Array	1428286_at	-	-
Affymetrix Mouse Clariom S Array	PSR0200042652.mm.1	TC0200004989.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200042652.mm.1	NR_024329.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042652.mm.1	NR_024329.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042646.mm.1	TC0200004989.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200042646.mm.1	NR_024329.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042646.mm.1	NR_024329.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042644.mm.1	TC0200004989.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200042644.mm.1	NR_024329.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042644.mm.1	NR_024329.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042654.mm.1	TC0200004989.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200042654.mm.1	NR_024329.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042654.mm.1	NR_024329.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042649.mm.1	TC0200004989.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200042649.mm.1	NR_024329.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042649.mm.1	NR_024329.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042650.mm.1	TC0200004989.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200042650.mm.1	NR_024329.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042650.mm.1	NR_024329.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042645.mm.1	TC0200004989.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200042645.mm.1	NR_024329.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042645.mm.1	NR_024329.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042647.mm.1	TC0200004989.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200042647.mm.1	NR_024329.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042647.mm.1	NR_024329.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042648.mm.1	TC0200004989.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200042648.mm.1	NR_024329.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200042648.mm.1	NR_024329.1	Refseq
Mouse Expression Set 430	1432646_PM_a_at	-	-
Mouse Expression Set 430	1432646_a_at	-	-
Mouse Expression Set 430	1428286_at	-	-
Mouse Expression Set 430	1428286_PM_at	-	-
Murine Genome U74v2 Set	96299_at	-	-
Murine Genome U74v2 Set	96299_PM_at	-	-
Murine Genome U74v2 Set	95848_PM_at	-	-
Murine Genome U74v2 Set	95848_at	-	-
Mouse Genome 430A 2.0 Array	1432646_a_at	-	-
Mouse Genome 430A 2.0 Array	1428286_PM_at	-	-
Mouse Genome 430A 2.0 Array	1432646_PM_a_at	-	-
Mouse Genome 430A 2.0 Array	1428286_at	-	-
Affymetrix HT Mouse Genome 430A Array	1428286_PM_at	-	-
Affymetrix HT Mouse Genome 430A Array	1432646_PM_a_at	-	-
Affymetrix HT Mouse Genome 430A Array	1428286_at	-	-
Affymetrix HT Mouse Genome 430A Array	1432646_a_at	-	-

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Genomic Map