Name: [Mm04411626_m1] [Halr1]
Creator: Thermo Fisher Scientific
Keywords: [Halr1] Assay, [Hoxa adjacent long noncoding RNA 1] Assay

Assay Details

Gene Symbol: Halr1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_110440.1		2 - 3	218		139

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AV481157.1	-	1 - 2	142		Chr. 6 - 52106774 - 52113584 [+] on Build GRCm38	139

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	src family associated phosphoprotein 2	Skap2	2610021A10Rik, AA960083, BB137539, RA70, SKAP-HOM, Saps, Scap2, mSKAP55R	-94.2kb	Anti-sense	Chr. 6 - 51859165 - 52012549 on NCBI Build GRCm38
Downstream	homeobox A1	Hoxa1	ERA1, Hox-1.6	41.7kb	Anti-sense	Chr. 6 - 52155367 - 52160410 on NCBI Build GRCm38

This assay targets the same location as MTA transcript cluster(s) TC0600000615.mm.1

Amplicon length greater than or equal to 101

3' Most

Mus musculus

Probe spans exons

Function(s) Process(es)

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0600004700.mm.1	TC0600000615.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004700.mm.1	NR_110440.1	Refseq