Rara
Genomic Map
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| Gene Symbol: Rara | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_031528.2 | NP_113716.2 | 3 - 4 | 695 | 73 | |
| XM_008767945.1 | XP_008766167.1 | 3 - 4 | 495 | 73 | ||
| GenBank mRNA | BC099830.1 | - | 3 - 4 | 695 | 73 | |
| U15211.1 | - | 3 - 4 | 701 | 73 | ||
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Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1000001595.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 71 and 85
Mammalian Gene Collection
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription by RNA polymerase II
ureteric bud development
neural tube closure
liver development
glandular epithelial cell development
outflow tract septum morphogenesis
growth plate cartilage development
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription by RNA polymerase II
protein phosphorylation
signal transduction
germ cell development
spermatogenesis
female pregnancy
positive regulation of cell population proliferation
negative regulation of cell population proliferation
male gonad development
positive regulation of gene expression
negative regulation of gene expression
positive regulation of phosphatidylinositol 3-kinase signaling
negative regulation of translation
hippocampus development
intracellular estrogen receptor signaling pathway
prostate gland development
regulation of granulocyte differentiation
negative regulation of granulocyte differentiation
embryonic camera-type eye development
regulation of myelination
response to estradiol
response to retinoic acid
negative regulation of interferon-gamma production
negative regulation of tumor necrosis factor production
positive regulation of interleukin-13 production
positive regulation of interleukin-4 production
positive regulation of interleukin-5 production
response to vitamin A
response to cytokine
multicellular organism growth
regulation of apoptotic process
negative regulation of apoptotic process
apoptotic cell clearance
steroid hormone mediated signaling pathway
regulation of phosphatidylinositol 3-kinase activity
response to ethanol
negative regulation of cell differentiation
positive regulation of T-helper 2 cell differentiation
positive regulation of neuron differentiation
positive regulation of cell cycle
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
negative regulation of translational initiation
regulation of synaptic plasticity
retinoic acid receptor signaling pathway
positive regulation of binding
positive regulation of protein kinase B signaling
ventricular cardiac muscle cell differentiation
Sertoli cell fate commitment
limb development
face development
bone development
trachea cartilage development
chondroblast differentiation
negative regulation of cartilage development
positive regulation of ERK1 and ERK2 cascade
cellular response to lipopolysaccharide
cellular response to retinoic acid
cellular response to estrogen stimulus
translation repressor activity, mRNA regulatory element binding
transcription cis-regulatory region binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
retinoic acid binding
DNA binding
DNA-binding transcription factor activity
steroid hormone receptor activity
transcription coactivator activity
transcription corepressor activity
nuclear receptor activity
signaling receptor binding
protein binding
transcription factor binding
zinc ion binding
enzyme binding
protein domain specific binding
chromatin DNA binding
phosphatidylinositol 3-kinase regulator activity
histone deacetylase binding
protein kinase B binding
sequence-specific DNA binding
retinoic acid-responsive element binding
protein heterodimerization activity
mRNA 5'-UTR binding
protein kinase A binding
alpha-actinin binding
negative regulation of transcription by RNA polymerase II
ureteric bud development
neural tube closure
liver development
glandular epithelial cell development
outflow tract septum morphogenesis
growth plate cartilage development
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription by RNA polymerase II
protein phosphorylation
signal transduction
germ cell development
spermatogenesis
female pregnancy
positive regulation of cell population proliferation
negative regulation of cell population proliferation
male gonad development
positive regulation of gene expression
negative regulation of gene expression
positive regulation of phosphatidylinositol 3-kinase signaling
negative regulation of translation
hippocampus development
intracellular estrogen receptor signaling pathway
prostate gland development
regulation of granulocyte differentiation
negative regulation of granulocyte differentiation
embryonic camera-type eye development
regulation of myelination
response to estradiol
response to retinoic acid
negative regulation of interferon-gamma production
negative regulation of tumor necrosis factor production
positive regulation of interleukin-13 production
positive regulation of interleukin-4 production
positive regulation of interleukin-5 production
response to vitamin A
response to cytokine
multicellular organism growth
regulation of apoptotic process
negative regulation of apoptotic process
apoptotic cell clearance
steroid hormone mediated signaling pathway
regulation of phosphatidylinositol 3-kinase activity
response to ethanol
negative regulation of cell differentiation
positive regulation of T-helper 2 cell differentiation
positive regulation of neuron differentiation
positive regulation of cell cycle
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
negative regulation of translational initiation
regulation of synaptic plasticity
retinoic acid receptor signaling pathway
positive regulation of binding
positive regulation of protein kinase B signaling
ventricular cardiac muscle cell differentiation
Sertoli cell fate commitment
limb development
face development
bone development
trachea cartilage development
chondroblast differentiation
negative regulation of cartilage development
positive regulation of ERK1 and ERK2 cascade
cellular response to lipopolysaccharide
cellular response to retinoic acid
cellular response to estrogen stimulus
translation repressor activity, mRNA regulatory element binding
transcription cis-regulatory region binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
retinoic acid binding
DNA binding
DNA-binding transcription factor activity
steroid hormone receptor activity
transcription coactivator activity
transcription corepressor activity
nuclear receptor activity
signaling receptor binding
protein binding
transcription factor binding
zinc ion binding
enzyme binding
protein domain specific binding
chromatin DNA binding
phosphatidylinositol 3-kinase regulator activity
histone deacetylase binding
protein kinase B binding
sequence-specific DNA binding
retinoic acid-responsive element binding
protein heterodimerization activity
mRNA 5'-UTR binding
protein kinase A binding
alpha-actinin binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P022943 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 282057 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 13057 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 284781 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 886628 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 625282 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 595251 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 48835 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 722046 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 13730 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P022943 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P022943 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P022943 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P461343 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 85081 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 43692 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10738134 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738133 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738132 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738139 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738138 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738136 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738135 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738137 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10738130 | - | - |
| Rat Genome 230 2.0 Array | 1390771_at | - | - |
| Rat Genome 230 2.0 Array | 1390771_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1373579_at | - | - |
| Rat Genome 230 2.0 Array | 1368176_at | - | - |
| Rat Genome 230 2.0 Array | 1373579_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1368176_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1368176_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1373579_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1373579_at | - | - |
| Affymetrix HT Rat Focus Array | 1368176_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1000014224.rn.1 | TC1000001595.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1000014227.rn.1 | TC1000001595.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1000014223.rn.1 | TC1000001595.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1000014225.rn.1 | TC1000001595.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1000014226.rn.1 | TC1000001595.rn.1 | RTA TC |
| Rat Expression Set 230 | 1373579_at | - | - |
| Rat Expression Set 230 | 1368176_at | - | - |
| Rat Expression Set 230 | 1368176_PM_at | - | - |
| Rat Expression Set 230 | 1373579_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738130 | - | - |
| Rat Genome U34 Set | AJ002940cds_s_at | - | - |
| Rat Genome U34 Set | U15211_at | - | - |
| Rat Genome U34 Set | U15211_g_at | - | - |
| Rat Genome U34 Set | U15211_g_at | - | - |
| Rat Genome U34 Set | AJ002940cds_s_at | - | - |
| Rat Genome U34 Set | U15211_at | - | - |
| Rat Genome U34 Set | U15211_g_at | - | - |
| Rat Genome U34 Set | U15211_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21517349 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1368986 | - | - |
| RatRef-12 Expression BeadChip | ILMN_57446 | - | - |
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