Thra
Genomic Map
Back To TopAssay Details
| Gene Symbol: Thra | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001017960.1 | NP_001017960.1 | 6 - 7 | 1009 | 65 | |
| NM_031134.2 | NP_112396.2 | 5 - 6 | 877 | 65 | ||
| GenBank mRNA | CB728734.1 | - | 2 - 3 | 358 | 65 | |
| M18028.1 | - | 6 - 7 | 899 | 65 | ||
| M31174.1 | - | 1091 | 65 | |||
| M31177.1 | - | 1 - 2 | 218 | 65 | ||
| X07409.1 | - | 4 - 5 | 538 | 65 | ||
| X12744.1 | - | 5 - 6 | 541 | 65 | ||
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Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1000001586.rn.1Set Membership: |
Ambion siRNA available
Amplicon length less than or equal to 70
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
cartilage condensation
ossification
kidney development
liver development
regulation of thyroid hormone mediated signaling pathway
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
brain development
learning or memory
regulation of heart contraction
female courtship behavior
response to cold
response to xenobiotic stimulus
hormone-mediated signaling pathway
animal organ morphogenesis
positive regulation of myotube differentiation
negative regulation of RNA polymerase II transcription preinitiation complex assembly
erythrocyte differentiation
lung development
adrenal gland development
intracellular receptor signaling pathway
thyroid gland development
response to nutrient levels
regulation of myeloid cell apoptotic process
cytoplasmic sequestering of transcription factor
steroid hormone mediated signaling pathway
negative regulation of DNA-binding transcription factor activity
negative regulation of transcription, DNA-templated
positive regulation of female receptivity
positive regulation of transcription by RNA polymerase II
digestive tract development
embryonic organ development
regulation of lipid catabolic process
type I pneumocyte differentiation
negative regulation of DNA-templated transcription, initiation
transcription cis-regulatory region binding
DNA-binding transcription factor activity, RNA polymerase II-specific
intronic transcription regulatory region sequence-specific DNA binding
steroid receptor RNA activator RNA binding
DNA binding
DNA-binding transcription factor activity
steroid hormone receptor activity
single-stranded RNA binding
nuclear receptor activity
transcription factor binding
zinc ion binding
TBP-class protein binding
protein domain specific binding
chromatin DNA binding
protein homodimerization activity
sequence-specific DNA binding
protein-containing complex binding
protein heterodimerization activity
protein dimerization activity
thyroid hormone binding
cartilage condensation
ossification
kidney development
liver development
regulation of thyroid hormone mediated signaling pathway
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
brain development
learning or memory
regulation of heart contraction
female courtship behavior
response to cold
response to xenobiotic stimulus
hormone-mediated signaling pathway
animal organ morphogenesis
positive regulation of myotube differentiation
negative regulation of RNA polymerase II transcription preinitiation complex assembly
erythrocyte differentiation
lung development
adrenal gland development
intracellular receptor signaling pathway
thyroid gland development
response to nutrient levels
regulation of myeloid cell apoptotic process
cytoplasmic sequestering of transcription factor
steroid hormone mediated signaling pathway
negative regulation of DNA-binding transcription factor activity
negative regulation of transcription, DNA-templated
positive regulation of female receptivity
positive regulation of transcription by RNA polymerase II
digestive tract development
embryonic organ development
regulation of lipid catabolic process
type I pneumocyte differentiation
negative regulation of DNA-templated transcription, initiation
transcription cis-regulatory region binding
DNA-binding transcription factor activity, RNA polymerase II-specific
intronic transcription regulatory region sequence-specific DNA binding
steroid receptor RNA activator RNA binding
DNA binding
DNA-binding transcription factor activity
steroid hormone receptor activity
single-stranded RNA binding
nuclear receptor activity
transcription factor binding
zinc ion binding
TBP-class protein binding
protein domain specific binding
chromatin DNA binding
protein homodimerization activity
sequence-specific DNA binding
protein-containing complex binding
protein heterodimerization activity
protein dimerization activity
thyroid hormone binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_43_P12534 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 679880 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 262456 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 123093 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 92536 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 871498 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 749956 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 273407 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 264627 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 392718 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 150932 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 637405 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 286257 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 529311 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 951059 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 963224 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 963284 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 298984 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 90360 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 3839 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 1443 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 702438 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 742866 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 454934 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 813287 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 206988 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 349710 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 141819 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 72887 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 11314 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 121303 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 97210 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 58328 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 179571 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 45614 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_43_P12534 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_43_P12534 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_43_P12534 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P12534 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 700923067 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 700517082 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 75486 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 79778 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 33015 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 67372 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 700517082 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 700923067 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10738062 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738069 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10746957 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738068 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738067 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738061 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738064 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10746958 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738058 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738065 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738070 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738060 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738059 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738057 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738063 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738066 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10746955 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10738056 | - | - |
| Rat Genome 230 2.0 Array | 1380518_PM_s_at | - | - |
| Rat Genome 230 2.0 Array | 1395928_at | - | - |
| Rat Genome 230 2.0 Array | 1370691_a_at | - | - |
| Rat Genome 230 2.0 Array | 1367726_at | - | - |
| Rat Genome 230 2.0 Array | 1380518_s_at | - | - |
| Rat Genome 230 2.0 Array | 1370691_PM_a_at | - | - |
| Rat Genome 230 2.0 Array | 1395928_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1367726_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1367726_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1380518_s_at | - | - |
| Affymetrix HT Rat Focus Array | 1370691_a_at | - | - |
| Affymetrix HT Rat Focus Array | 1380518_PM_s_at | - | - |
| Affymetrix HT Rat Focus Array | 1367726_at | - | - |
| Affymetrix HT Rat Focus Array | 1370691_PM_a_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1000014083.rn.1 | TC1000001586.rn.1 | RTA TC |
| Rat Expression Set 230 | 1367726_PM_at | - | - |
| Rat Expression Set 230 | 1370691_PM_a_at | - | - |
| Rat Expression Set 230 | 1367726_at | - | - |
| Rat Expression Set 230 | 1370691_a_at | - | - |
| Rat Expression Set 230 | 1380518_PM_s_at | - | - |
| Rat Expression Set 230 | 1380518_s_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10738056 | - | - |
| Rat Genome U34 Set | X12744_at | - | - |
| Rat Genome U34 Set | M31174_at | - | - |
| Rat Genome U34 Set | M31174_g_at | - | - |
| Rat Genome U34 Set | rc_AA997529_i_at | - | - |
| Rat Genome U34 Set | rc_AA997529_s_at | - | - |
| Rat Genome U34 Set | rc_AA997529_r_at | - | - |
| Rat Genome U34 Set | M31174_at | - | - |
| Rat Genome U34 Set | M31174_g_at | - | - |
| Rat Genome U34 Set | X12744_at | - | - |
| Rat Genome U34 Set | rc_AA997529_s_at | - | - |
| Rat Genome U34 Set | M31174_g_at | - | - |
| Rat Genome U34 Set | M31174_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21613212 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1354266 | - | - |
| RatRef-12 Expression BeadChip | ILMN_67298 | - | - |
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