Mecp2
Genomic Map
Back To TopAssay Details
| Gene Symbol: Mecp2 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_022673.2 | NP_073164.2 | 3 - 4 | 582 | 148 | |
| XM_006229566.2 | XP_006229628.1 | 3 - 4 | 756 | 148 | ||
| XM_006229567.2 | XP_006229629.1 | 2 - 3 | 866 | 148 | ||
| GenBank mRNA | DQ897368.1 | - | 2 - 3 | 458 | 148 | |
| DQ897369.1 | - | 3 - 4 | 582 | 148 | ||
| M94064.1 | - | 2 - 3 | 424 | 148 | ||
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Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0X00001299.rn.1Set Membership: |
Ambion siRNA available
Amplicon length greater than or equal to 101
3' Most
Detect Genomic DNA
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription by RNA polymerase II
behavioral fear response
response to hypoxia
startle response
nervous system process involved in regulation of systemic arterial blood pressure
regulation of respiratory gaseous exchange by nervous system process
inositol metabolic process
mitochondrial electron transport, ubiquinol to cytochrome c
regulation of gene expression by genetic imprinting
transcription, DNA-templated
regulation of transcription, DNA-templated
glutamine metabolic process
cellular biogenic amine metabolic process
chemical synaptic transmission
synapse assembly
brain development
heart development
respiratory gaseous exchange by respiratory system
learning
memory
long-term memory
protein localization
glucocorticoid metabolic process
positive regulation of cell population proliferation
adult locomotory behavior
visual learning
post-embryonic development
response to ionizing radiation
response to lead ion
regulation of gene expression
response to organic cyclic compound
dendrite development
histone methylation
histone acetylation
proprioception
sensory perception of pain
cerebellum development
ventricular system development
neuron differentiation
negative regulation of histone methylation
neuron projection development
cardiolipin metabolic process
response to estradiol
multicellular organismal response to stress
negative regulation of histone acetylation
social behavior
regulation of gene expression, epigenetic
neuron maturation
negative regulation of neuron apoptotic process
regulation of DNA methylation
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
phosphatidylcholine metabolic process
regulation of synaptic plasticity
negative regulation of astrocyte differentiation
catecholamine secretion
neuromuscular process controlling posture
neuromuscular process
positive regulation of synapse assembly
excitatory postsynaptic potential
long-term synaptic potentiation
four-way junction DNA binding
DNA binding
chromatin binding
DNA-binding transcription factor activity
RNA binding
mRNA binding
transcription factor binding
methyl-CpG binding
double-stranded methylated DNA binding
enzyme binding
protein domain specific binding
chromatin DNA binding
siRNA binding
histone deacetylase binding
unmethylated CpG binding
protein N-terminus binding
negative regulation of transcription by RNA polymerase II
behavioral fear response
response to hypoxia
startle response
nervous system process involved in regulation of systemic arterial blood pressure
regulation of respiratory gaseous exchange by nervous system process
inositol metabolic process
mitochondrial electron transport, ubiquinol to cytochrome c
regulation of gene expression by genetic imprinting
transcription, DNA-templated
regulation of transcription, DNA-templated
glutamine metabolic process
cellular biogenic amine metabolic process
chemical synaptic transmission
synapse assembly
brain development
heart development
respiratory gaseous exchange by respiratory system
learning
memory
long-term memory
protein localization
glucocorticoid metabolic process
positive regulation of cell population proliferation
adult locomotory behavior
visual learning
post-embryonic development
response to ionizing radiation
response to lead ion
regulation of gene expression
response to organic cyclic compound
dendrite development
histone methylation
histone acetylation
proprioception
sensory perception of pain
cerebellum development
ventricular system development
neuron differentiation
negative regulation of histone methylation
neuron projection development
cardiolipin metabolic process
response to estradiol
multicellular organismal response to stress
negative regulation of histone acetylation
social behavior
regulation of gene expression, epigenetic
neuron maturation
negative regulation of neuron apoptotic process
regulation of DNA methylation
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
phosphatidylcholine metabolic process
regulation of synaptic plasticity
negative regulation of astrocyte differentiation
catecholamine secretion
neuromuscular process controlling posture
neuromuscular process
positive regulation of synapse assembly
excitatory postsynaptic potential
long-term synaptic potentiation
four-way junction DNA binding
DNA binding
chromatin binding
DNA-binding transcription factor activity
RNA binding
mRNA binding
transcription factor binding
methyl-CpG binding
double-stranded methylated DNA binding
enzyme binding
protein domain specific binding
chromatin DNA binding
siRNA binding
histone deacetylase binding
unmethylated CpG binding
protein N-terminus binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P090105 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 715566 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 318956 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 311264 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 453726 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 567069 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 447592 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 503227 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 433353 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 571094 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 191815 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 782585 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 18138 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 577912 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 618862 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 656880 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 832827 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 400689 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 573642 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 453581 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 337963 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 477647 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 352788 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 534271 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 674028 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 380690 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 608971 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 844546 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 780610 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 759377 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 315857 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 288321 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 37482 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 584412 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 125147 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 491008 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 859859 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 150854 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 10015 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 838692 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 277348 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 612269 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 83134 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 220002 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 564341 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 85444 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 85721 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 118290 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 13108 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 149429 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P090105 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P090105 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P090105 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P12285 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 74733 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 51428 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 100938 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 59823 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 100233 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10940318 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10940317 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10940316 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10940319 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10940315 | - | - |
| Rat Genome 230 2.0 Array | 1369277_at | - | - |
| Rat Genome 230 2.0 Array | 1398174_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1369277_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1398174_at | - | - |
| Affymetrix HT Rat Focus Array | 1369277_at | - | - |
| Affymetrix HT Rat Focus Array | 1369277_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1398174_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1398174_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0X00007806.rn.1 | TC0X00001299.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0X00007801.rn.1 | TC0X00001299.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0X00007804.rn.1 | TC0X00001299.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0X00007800.rn.1 | TC0X00001299.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0X00007807.rn.1 | TC0X00001299.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0X00007809.rn.1 | TC0X00001299.rn.1 | RTA TC |
| Rat Expression Set 230 | 1369277_PM_at | - | - |
| Rat Expression Set 230 | 1369277_at | - | - |
| Rat Expression Set 230 | 1398174_PM_at | - | - |
| Rat Expression Set 230 | 1398174_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10940315 | - | - |
| Rat Genome U34 Set | M94064_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 20711731 | - | - |
| ABI Rat Genome Survey Microarray | 22414513 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1353024 | - | - |
| RatRef-12 Expression BeadChip | ILMN_57729 | - | - |
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